10x-genomics-cloud.create_cellranger_count_analysis medium conf mediumaudit redact
Launches a Cell Ranger count pipeline that consumes compute credits and processes potentially sensitive sequencing data.
10x-genomics-cloud.create_cellranger_multi_analysis medium conf mediumaudit redact
Launches a multi-library Cell Ranger pipeline; consumes compute and may process PHI-adjacent sequencing data.
All other tools (21)
10x-genomics-cloud.create_project low conf highallow
Creates a new container for genomics analyses and files.
10x-genomics-cloud.get_aggr_csv_config_spec low conf highallow
Returns the schema for aggregation CSV configs.
10x-genomics-cloud.get_analysis_details low conf highallow
Reads run configuration and status for a specific analysis.
10x-genomics-cloud.get_multi_csv_config_spec low conf highallow
Returns the schema for multi-library CSV configs.
10x-genomics-cloud.get_reference low conf highallow
Reads reference genome metadata.
10x-genomics-cloud.get_tool_version low conf highallow
Reports MCP server version; non-sensitive metadata.
10x-genomics-cloud.list_analyses low conf highallow
Enumerates analyses across the user's projects.
10x-genomics-cloud.list_analysis_files low conf highallow
Enumerates output files for a completed analysis.
10x-genomics-cloud.list_annotation_models low conf highallow
Lists cell-type annotation models available for analysis.
10x-genomics-cloud.list_custom_references low conf highallow
Lists user-uploaded reference genomes.
10x-genomics-cloud.list_fastqs low conf highallow
Enumerates FASTQ inputs uploaded to the project.
10x-genomics-cloud.list_libraries low conf highallow
Enumerates sequencing libraries registered in the project.
10x-genomics-cloud.list_prebuilt_references low conf highallow
Lists vendor-curated reference genomes.
10x-genomics-cloud.list_project_files low conf highallow
Lists ancillary files attached to the project.
10x-genomics-cloud.list_projects low conf highallow
Lists genomics projects accessible to the authenticated user.
10x-genomics-cloud.set_library low conf highallow
Associates FASTQs with a library definition for downstream pipelines.
10x-genomics-cloud.update_project low conf highallow
Modifies project metadata; non-destructive to underlying data.
10x-genomics-cloud.update_reference low conf highallow
Updates metadata on a custom reference.
10x-genomics-cloud.upload_project_file low conf mediumallow
Stores a project-level file (config, metadata, supporting docs).
10x-genomics-cloud.upload_reference low conf mediumallow
Uploads a custom reference genome to the project.
10x-genomics-cloud.verify_auth low conf highallow
Confirms the supplied API token is valid for the cloud account.